Use this to to set options for the one channel quantile normalization menu.
Specifies which way that the overall distribution is produced from the CDFs from each slide.
|Means||The mean is taken across CDFs.|
|Medians||The median is taken across CDFs.|
|Geometric means||The geometric mean is taken across CDF’s. This is the mean on the log scale, back-transformed to the natural scale.|
Specifies which items of output are to be produced.
|Summary||A summary of the quantiles on each slide and of the overall distribution that the slides are normalized to.|
Specifies which graphs are to be produced.
|Histogram of intensities by slide||The plot of the histogram of intensities on each slide in a trellis plot|
|CDFs of intensity by slide||The plot of the cumulative probability of intensities on each slide.|
|Use trellis plot for CDFs||This is an option that puts the CDF plots in either a trellis plot or superimposed on a common graph, if not selected.|
|Histogram of normalized intensity||The plot of the histogram of intensities that each slide is normalized to.|
|CDF of intensities by slide||The plot of the cumulative probability of intensities that each slide is normalized to.|
|OK||Save the options settings and close the dialog.|
|Cancel||Close the dialog without making any changes.|
|Defaults||Reset the options to their default settings.|
|Clear||Clear all fields and list boxes.|
|Help||Open the Help topic for this dialog.|