Use this to to set options for the one channel quantile normalization menu.

## Summary method

Specifies which way that the overall distribution is produced from the CDFs from each slide.

Means |
The mean is taken across CDFs. |

Medians |
The median is taken across CDFs. |

Geometric means |
The geometric mean is taken across CDF’s. This is the mean on the log scale, back-transformed to the natural scale. |

## Display

Specifies which items of output are to be produced.

Summary |
A summary of the quantiles on each slide and of the overall distribution that the slides are normalized to. |

## Graphics

Specifies which graphs are to be produced.

Histogram of intensities by slide |
The plot of the histogram of intensities on each slide in a trellis plot |

CDFs of intensity by slide |
The plot of the cumulative probability of intensities on each slide. |

Use trellis plot for CDFs |
This is an option that puts the CDF plots in either a trellis plot or superimposed on a common graph, if not selected. |

Histogram of normalized intensity |
The plot of the histogram of intensities that each slide is normalized to. |

CDF of intensities by slide |
The plot of the cumulative probability of intensities that each slide is normalized to. |

## Action buttons

OK |
Save the options settings and close the dialog. |

Cancel |
Close the dialog without making any changes. |

Defaults |
Reset the options to their default settings. |

## Action Icons

Clear |
Clear all fields and list boxes. | |

Help |
Open the Help topic for this dialog. |

## See also

- One channel Quantile Normalization menu
- QNORMALIZE procedure