Select menu: Stats | QTLs (Linkage/Association) | Data Import/Export | Save Genotypic (Marker and Map) data
Use this to export marker scores and associated map data to Flapjack file format. When data are exported in this format they can be imported into both Genstat and Flapjack.
- From the menu select
Stats | QTLs (Linkage/Association) | Data Import/Export | Save Genotypic (Marker and Map) data.
- Fill in the fields as required then click Save.
This specifies the name for the genotype data file. This file will store the information for the genotype scores for each marker. You can browse for a filename by clicking on the button.
This file will store the map positions and linkage group information for all loci. You can browse for a filename by clicking on the button.
Type of population
Specifies the population type for export. Select a population as follows:
- F2 for an F2 population
- BC1 for a backcross population
- DH for a double-haploid population
- RILn for a population of recombinant inbred lines
- CP for outcross populations
- AMP for an association mapping population.
When a population is selected the relevant fields will be enabled on the dialog.
Specifies the data structure names that are to be exported.
|Marker genotypes||Pointer||A pointer containing a set of factors (one for each marker) where each factor has the same labels representing the genotype scores and the labels are all in the same order.|
|Marker names||Text||A text containing the marker names.|
|Linkage groups||Factor||A factor identifying the linkage group for each marker.|
|Positions within linkage groups||Variate||A variate containing the positions within the linkage groups for each marker.|
|Genotype labels||Text||A text containing id labels for genotypes. These can be used to ensure the genotypes for the phenotypic data matches the map data.|
|Parental information||Pointer||A pointer to a set of texts (one for each parent) containing the parent information.|
|Parent labels||Text||A text containing id labels for the parental information.|
Provides additional options for exporting the data.
|Separator between marker genotypes||Specifies the character that is used to separate the marker genotypes within a Flapjack text genotype file. You can choose either Tab, Spaces or supply another character in the space provided.|
|Separator between alleles||Provides a space to specify a character to use to separate the alleles in the Flapjack text genotype # file. If no separator has been used then leave this field empty.|
|Missing data string||Specifies the character to represent missing data in a Flapjack text genotype file.|
|Clear||Clear all fields and list boxes.|
|Help||Open the Help topic for this dialog.|