Microarray Two-way Clustering Store Options

Use this to save results from two-way clustering. These results are saved when an analysis is run and must be specified before running an analysis.

After selecting the appropriate boxes, type names for the data structures into the corresponding In fields.

Save

The table below indicates the type of structures formed for each item.

Two-way cluster mean matrix	Matrix	The tabulation of the Log-ratios by probe groups and target groups, as a two-way matrix. This contains data used by the shade plot.
Probe group membership	Factor	Stores the probe group membership for each probe or gene. The groups are specified by the Probe groups or Probe groups threshold % options for the hierarchical and non-hierarchical cluster methods respectively.
Target group membership	Factor	Stores the target group membership for each target or slide. The groups are specified by the Threshold % or Number of groups options for the Hierarchical and Non-hierarchical cluster methods respectively.
Probe amalgamations matrix	Matrix	Contains the probes or genes amalgamation data produced by hierarchical clustering. This is only available if the Cluster method is set to Hierarchical.
Target amalgamations matrix	Matrix	Contains the target or slides amalgamation data produced by hierarchical clustering. This is only available if the Cluster method is set to Hierarchical.

Select this to display the results in a new spreadsheet window.

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