Use this to set the options for the False Discovery Rate using Bonferroni menu.
Specifies which items of output are to be produced.
|Pi 0||The estimate of π0|
Specifies which graphs are to be produced:
|Histogram of P-values||The histogram of input probabilities|
|Histogram of Q-values||The histogram of q – values – the estimated false discovery rates|
|Lambda vs Pi 0||The plot of λ against π0 (when only one value of λ is specified the default values (0,0.05…0.9) are used).|
|Tests||The plot of the sorted tests against q-values.|
|Expected false positives||The plot of the number of expected false positives against the sorted tests.|
|Inference||The plot of FDR, FRR and power against p|
|Log inference||The plot of FDR, FRR and power statistics on log scales, with the X-axis restricted to probabilities < 0.5, with a background grid, to enable estimates to be read for specific probability values.|
Display key in plots
Display under the inference plots the key to the curves for FDR, FRR and power.
Lower bound of q-values to use with plots Q vs P, Tests and Expected false positives.
Upper bound of q-values to use with plots Q vs P, Tests and Expected false positives.
|OK||Save options and close the dialog.|
|Cancel||Close the dialog without further changes.|
|Defaults||Reset options to the default settings.|
|Clear||Clear all fields and list boxes.|
|Help||Open the Help topic for this dialog.|